{
  "_id": "6a49a89f084b645cca9b2541",
  "Package": "fishtree",
  "Type": "Package",
  "Title": "Interface to the Fish Tree of Life API",
  "Version": "0.3.4.9000",
  "Authors@R": "c(\nperson(\"Jonathan\", \"Chang\", role = c(\"aut\", \"cre\"),\nemail = \"me@jonathanchang.org\",\ncomment = c(\"ORCID\" = \"0000-0002-3811-1254\")),\nperson(\"Michael E\", \"Alfaro\", role = \"ctb\"),\nperson(\"Daniel L\", \"Rabosky\", role = \"ctb\"),\nperson(\"Stephen A\", \"Smith\", role = \"ctb\")\n)",
  "Description": "An interface to the Fish Tree of Life API to download\ntaxonomies, phylogenies, fossil calibrations, and\ndiversification rate information for ray-finned fishes.",
  "License": "BSD_2_clause + file LICENSE",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.3.0",
  "URL": "https://fishtreeoflife.org/, https://github.com/jonchang/fishtree",
  "BugReports": "https://github.com/jonchang/fishtree/issues",
  "VignetteBuilder": "knitr",
  "Language": "en-US",
  "Repository": "https://jonchang.r-universe.dev",
  "Date/Publication": "2026-06-19 01:51:23 UTC",
  "RemoteUrl": "https://github.com/jonchang/fishtree",
  "RemoteRef": "HEAD",
  "RemoteSha": "f06abfcc2c3faab5b31d0b0ad4c92964c5976d2a",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-19 04:13:13 UTC",
    "User": "root"
  },
  "Author": "Jonathan Chang [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-3811-1254>),\nMichael E Alfaro [ctb],\nDaniel L Rabosky [ctb],\nStephen A Smith [ctb]",
  "Maintainer": "Jonathan Chang <me@jonathanchang.org>",
  "_user": "jonchang",
  "_type": "src",
  "_file": "fishtree_0.3.4.9000.tar.gz",
  "_fileid": "https://r2.ropensci.org/234f2470429cb22328444df446d48c12552a27b71e803f521b62dba93063ea97",
  "_filesize": 138914,
  "_sha256": "234f2470429cb22328444df446d48c12552a27b71e803f521b62dba93063ea97",
  "_expires": "2026-10-13T00:43:10.000Z",
  "_created": "2026-06-19T04:13:13.000Z",
  "_published": "2026-07-05T00:43:11.628Z",
  "_jobs": [
    {
      "job": 85179885887,
      "time": 185,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7741581764"
    },
    {
      "job": 85179886075,
      "time": 147,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7741575468"
    },
    {
      "job": 85179885881,
      "time": 146,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7741571746"
    },
    {
      "job": 85179885942,
      "time": 164,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7741572487"
    },
    {
      "job": 85179885798,
      "time": 195,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7741551142"
    },
    {
      "job": 85179886056,
      "time": 139,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7741574150"
    },
    {
      "job": 85179885952,
      "time": 95,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7741567044"
    },
    {
      "job": 85179885994,
      "time": 79,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7741564405"
    },
    {
      "job": 85179885919,
      "time": 98,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7741567429"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/jonchang/actions/runs/27804819051",
  "_status": "success",
  "_upstream": "https://github.com/jonchang/fishtree",
  "_commit": {
    "id": "f06abfcc2c3faab5b31d0b0ad4c92964c5976d2a",
    "author": "dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Bump actions/checkout from 6 to 7 (#27)\n\nBumps [actions/checkout](https://github.com/actions/checkout) from 6 to 7.\n- [Release notes](https://github.com/actions/checkout/releases)\n- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)\n- [Commits](https://github.com/actions/checkout/compare/v6...v7)\n\n---\nupdated-dependencies:\n- dependency-name: actions/checkout\n  dependency-version: '7'\n  dependency-type: direct:production\n  update-type: version-update:semver-major\n...\n\nSigned-off-by: dependabot[bot] <support@github.com>\nCo-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>",
    "time": 1781833883
  },
  "_maintainer": {
    "name": "Jonathan Chang",
    "email": "me@jonathanchang.org",
    "login": "jonchang",
    "orcid": "0000-0002-3811-1254",
    "description": "",
    "uuid": 213484
  },
  "_distro": "noble",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.0",
      "role": "Depends"
    },
    {
      "package": "ape",
      "version": ">= 5.2",
      "role": "Imports"
    },
    {
      "package": "jsonlite",
      "version": ">= 1.5",
      "role": "Imports"
    },
    {
      "package": "memoise",
      "role": "Imports"
    },
    {
      "package": "parallel",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "version": ">= 0.4.1",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "diversitree",
      "role": "Suggests"
    },
    {
      "package": "geiger",
      "role": "Suggests"
    },
    {
      "package": "hisse",
      "version": ">= 2.1.11",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "markdown",
      "role": "Suggests"
    },
    {
      "package": "phytools",
      "role": "Suggests"
    },
    {
      "package": "picante",
      "role": "Suggests"
    },
    {
      "package": "rfishbase",
      "version": ">= 4.1.2",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "spelling",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    }
  ],
  "_owner": "jonchang",
  "_selfowned": true,
  "_usedby": 1,
  "_updates": [
    {
      "week": "2025-38",
      "n": 1
    },
    {
      "week": "2025-47",
      "n": 1
    },
    {
      "week": "2026-21",
      "n": 1
    },
    {
      "week": "2026-25",
      "n": 1
    }
  ],
  "_tags": [],
  "_topics": [
    "phylogeny"
  ],
  "_stars": 12,
  "_contributors": [
    {
      "user": "jonchang",
      "count": 210,
      "uuid": 213484
    },
    {
      "user": "lbreedy",
      "count": 1,
      "uuid": 99297254
    }
  ],
  "_userbio": {
    "uuid": 213484,
    "type": "user",
    "name": "Jonathan Chang",
    "followers": 152
  },
  "_downloads": {
    "count": 437,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/fishtree"
  },
  "_mentions": 2,
  "_devurl": "https://github.com/jonchang/fishtree",
  "_searchresults": 83,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/fishtree.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "LICENSE",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/jonchang/fishtree",
  "_realowner": "jonchang",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.1.0",
      "date": "2018-11-30"
    },
    {
      "version": "0.2.0",
      "date": "2019-02-26"
    },
    {
      "version": "0.3.0",
      "date": "2019-04-03"
    },
    {
      "version": "0.3.1",
      "date": "2019-05-31"
    },
    {
      "version": "0.3.2",
      "date": "2019-12-17"
    },
    {
      "version": "0.3.3",
      "date": "2020-10-31"
    },
    {
      "version": "0.3.4",
      "date": "2021-01-31"
    }
  ],
  "_exports": [
    "fishtree_alignment",
    "fishtree_complete_phylogeny",
    "fishtree_phylogeny",
    "fishtree_rogues",
    "fishtree_taxonomy",
    "fishtree_tip_rates"
  ],
  "_help": [
    {
      "page": "fishtree_alignment",
      "title": "Get aligned sequences from the Fish Tree of Life",
      "topics": [
        "fishtree_alignment"
      ]
    },
    {
      "page": "fishtree_complete_phylogeny",
      "title": "Get complete (stochastically-resolved) phylogenies from the Fish Tree of Life",
      "topics": [
        "fishtree_complete_phylogeny"
      ]
    },
    {
      "page": "fishtree_phylogeny",
      "title": "Get a phylogeny from the Fish Tree of Life",
      "topics": [
        "fishtree_phylogeny"
      ]
    },
    {
      "page": "fishtree_rogues",
      "title": "Get rogue taxa that break the monophyly of defined taxa",
      "topics": [
        "fishtree_rogues"
      ]
    },
    {
      "page": "fishtree_taxonomy",
      "title": "Get taxonomies and other data from the Fish Tree of Life",
      "topics": [
        "fishtree_taxonomy"
      ]
    },
    {
      "page": "fishtree_tip_rates",
      "title": "Get tip rates for the Fish Tree of Life",
      "topics": [
        "fishtree_tip_rates"
      ]
    }
  ],
  "_readme": "https://github.com/jonchang/fishtree/raw/HEAD/README.md",
  "_rundeps": [
    "ape",
    "cachem",
    "digest",
    "fastmap",
    "jsonlite",
    "lattice",
    "memoise",
    "nlme",
    "Rcpp",
    "rlang"
  ],
  "_vignettes": [
    {
      "source": "comparative-analysis.Rmd",
      "filename": "comparative-analysis.html",
      "title": "A simple comparative analysis with the Fish Tree of Life",
      "author": "Jonathan Chang",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Getting and cleaning data",
        "Plotting diversification rates",
        "Running an analysis"
      ],
      "created": "2018-08-17 00:24:15",
      "modified": "2024-12-13 22:30:12",
      "commits": 14
    },
    {
      "source": "community-analysis.Rmd",
      "filename": "community-analysis.html",
      "title": "Phylogenetic community assembly with the Fish Tree of Life",
      "author": "Jonathan Chang",
      "engine": "knitr::rmarkdown",
      "headings": [],
      "created": "2019-02-19 23:29:27",
      "modified": "2024-12-13 22:30:12",
      "commits": 7
    }
  ],
  "_score": 7.378470580135305,
  "_indexed": true,
  "_nocasepkg": "fishtree",
  "_universes": [
    "jonchang"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.3.4.9000",
      "date": "2026-06-19T04:16:18.000Z",
      "distro": "noble",
      "commit": "f06abfcc2c3faab5b31d0b0ad4c92964c5976d2a",
      "fileid": "https://r2.ropensci.org/05d02ad58a815f1fa6879b40f5b350cc995133fbf27825aacf03f45a96172cf7",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jonchang/actions/runs/27804819051"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.3.4.9000",
      "date": "2026-06-19T04:15:40.000Z",
      "distro": "noble",
      "commit": "f06abfcc2c3faab5b31d0b0ad4c92964c5976d2a",
      "fileid": "https://r2.ropensci.org/01f1a4dd79b1e560ce806894bcecd4addea945946a24e95a8c216ca6dd67d758",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jonchang/actions/runs/27804819051"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.3.4.9000",
      "date": "2026-06-19T04:15:22.000Z",
      "commit": "f06abfcc2c3faab5b31d0b0ad4c92964c5976d2a",
      "fileid": "https://r2.ropensci.org/3b215e8ced357cb9c6ca392450d1765b82dec459ba96c59d0d8beb33b7182a08",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jonchang/actions/runs/27804819051"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.3.4.9000",
      "date": "2026-06-19T04:15:24.000Z",
      "commit": "f06abfcc2c3faab5b31d0b0ad4c92964c5976d2a",
      "fileid": "https://r2.ropensci.org/8c2e32e57b555779b534f39d42def445966f8e5633b4398d4bc01ced5f486a09",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jonchang/actions/runs/27804819051"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.3.4.9000",
      "date": "2026-06-19T04:15:47.000Z",
      "commit": "f06abfcc2c3faab5b31d0b0ad4c92964c5976d2a",
      "fileid": "https://r2.ropensci.org/14e6afc18ce5f31458016003fa6be591c1ec4fac7cafb5566f492ee56922b257",
      "status": "success",
      "buildurl": "https://github.com/r-universe/jonchang/actions/runs/27804819051"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.3.4.9000",
      "date": "2026-06-19T04:14:38.000Z",
      "commit": "f06abfcc2c3faab5b31d0b0ad4c92964c5976d2a",
      "fileid": "https://r2.ropensci.org/286107a78348e24eb97870e7cb47fc77c1cfba8a92518a569c9b975e05cf2664",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jonchang/actions/runs/27804819051"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.3.4.9000",
      "date": "2026-06-19T04:14:29.000Z",
      "commit": "f06abfcc2c3faab5b31d0b0ad4c92964c5976d2a",
      "fileid": "https://r2.ropensci.org/dd5c23542a721e48e481503e6f0b0b59583cb684563f751a9b8c0e61b9e93df5",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jonchang/actions/runs/27804819051"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.3.4.9000",
      "date": "2026-06-19T04:14:47.000Z",
      "commit": "f06abfcc2c3faab5b31d0b0ad4c92964c5976d2a",
      "fileid": "https://r2.ropensci.org/b7ededfd444f6ff0da0234bb5bed21e6a6a03ee3a1c109e879a75be82e5dd9e0",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jonchang/actions/runs/27804819051"
    }
  ]
}