{
  "_id": "6a133ec9acfb0bcc41d28e1a",
  "Package": "fishtree",
  "Type": "Package",
  "Title": "Interface to the Fish Tree of Life API",
  "Version": "0.3.4.9000",
  "Authors@R": "c(\nperson(\"Jonathan\", \"Chang\", role = c(\"aut\", \"cre\"),\nemail = \"me@jonathanchang.org\",\ncomment = c(\"ORCID\" = \"0000-0002-3811-1254\")),\nperson(\"Michael E\", \"Alfaro\", role = \"ctb\"),\nperson(\"Daniel L\", \"Rabosky\", role = \"ctb\"),\nperson(\"Stephen A\", \"Smith\", role = \"ctb\")\n)",
  "Description": "An interface to the Fish Tree of Life API to download\ntaxonomies, phylogenies, fossil calibrations, and\ndiversification rate information for ray-finned fishes.",
  "License": "BSD_2_clause + file LICENSE",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.3.0",
  "URL": "https://fishtreeoflife.org/, https://github.com/jonchang/fishtree",
  "BugReports": "https://github.com/jonchang/fishtree/issues",
  "VignetteBuilder": "knitr",
  "Language": "en-US",
  "Repository": "https://jonchang.r-universe.dev",
  "Date/Publication": "2026-05-24 17:37:01 UTC",
  "RemoteUrl": "https://github.com/jonchang/fishtree",
  "RemoteRef": "HEAD",
  "RemoteSha": "3b661153886ef986c7c3ef4fe62d8e5578621420",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-24 18:05:32 UTC",
    "User": "root"
  },
  "Author": "Jonathan Chang [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-3811-1254>),\nMichael E Alfaro [ctb],\nDaniel L Rabosky [ctb],\nStephen A Smith [ctb]",
  "Maintainer": "Jonathan Chang <me@jonathanchang.org>",
  "MD5sum": "7f0ee73729ec9bb01d83050ae3aab348",
  "_user": "jonchang",
  "_type": "src",
  "_file": "fishtree_0.3.4.9000.tar.gz",
  "_fileid": "ce272bdc08b89a89fb1b606099646f7ee3d9a3dc21dd88081ae19d63dce70298",
  "_filesize": 136851,
  "_sha256": "ce272bdc08b89a89fb1b606099646f7ee3d9a3dc21dd88081ae19d63dce70298",
  "_created": "2026-05-24T18:05:32.000Z",
  "_published": "2026-05-24T18:09:13.788Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77617163179,
      "time": 184,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7187270735"
    },
    {
      "job": 77617163158,
      "time": 164,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7187269014"
    },
    {
      "job": 77617163183,
      "time": 87,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7187261491"
    },
    {
      "job": 77617163245,
      "time": 113,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7187263964"
    },
    {
      "job": 77616937255,
      "time": 228,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7187252316"
    },
    {
      "job": 77617163157,
      "time": 124,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7187265105"
    },
    {
      "job": 77617163189,
      "time": 90,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7187261793"
    },
    {
      "job": 77617163178,
      "time": 97,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7187262716"
    },
    {
      "job": 77617163174,
      "time": 89,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7187261676"
    }
  ],
  "_buildurl": "https://github.com/r-universe/jonchang/actions/runs/26368722351",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/jonchang/fishtree",
  "_commit": {
    "id": "3b661153886ef986c7c3ef4fe62d8e5578621420",
    "author": "Jonathan Chang <me@jonathanchang.org>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Rename CI action branch",
    "time": 1779644221
  },
  "_maintainer": {
    "name": "Jonathan Chang",
    "email": "me@jonathanchang.org",
    "login": "jonchang",
    "orcid": "0000-0002-3811-1254",
    "description": "",
    "uuid": 213484
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.0",
      "role": "Depends"
    },
    {
      "package": "ape",
      "version": ">= 5.2",
      "role": "Imports"
    },
    {
      "package": "jsonlite",
      "version": ">= 1.5",
      "role": "Imports"
    },
    {
      "package": "memoise",
      "role": "Imports"
    },
    {
      "package": "parallel",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "version": ">= 0.4.1",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "diversitree",
      "role": "Suggests"
    },
    {
      "package": "geiger",
      "role": "Suggests"
    },
    {
      "package": "hisse",
      "version": ">= 2.1.11",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "markdown",
      "role": "Suggests"
    },
    {
      "package": "phytools",
      "role": "Suggests"
    },
    {
      "package": "picante",
      "role": "Suggests"
    },
    {
      "package": "rfishbase",
      "version": ">= 4.1.2",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "spelling",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    }
  ],
  "_owner": "jonchang",
  "_selfowned": true,
  "_usedby": 1,
  "_updates": [
    {
      "week": "2025-38",
      "n": 1
    },
    {
      "week": "2025-47",
      "n": 1
    },
    {
      "week": "2026-21",
      "n": 1
    }
  ],
  "_tags": [],
  "_topics": [
    "phylogeny"
  ],
  "_stars": 12,
  "_contributors": [
    {
      "user": "jonchang",
      "count": 210,
      "uuid": 213484
    },
    {
      "user": "lbreedy",
      "count": 1,
      "uuid": 99297254
    }
  ],
  "_userbio": {
    "uuid": 213484,
    "type": "user",
    "name": "Jonathan Chang"
  },
  "_downloads": {
    "count": 344,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/fishtree"
  },
  "_mentions": 2,
  "_devurl": "https://github.com/jonchang/fishtree",
  "_searchresults": 74,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/fishtree.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/jonchang/fishtree",
  "_realowner": "jonchang",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.1.0",
      "date": "2018-11-30"
    },
    {
      "version": "0.2.0",
      "date": "2019-02-26"
    },
    {
      "version": "0.3.0",
      "date": "2019-04-03"
    },
    {
      "version": "0.3.1",
      "date": "2019-05-31"
    },
    {
      "version": "0.3.2",
      "date": "2019-12-17"
    },
    {
      "version": "0.3.3",
      "date": "2020-10-31"
    },
    {
      "version": "0.3.4",
      "date": "2021-01-31"
    }
  ],
  "_exports": [
    "fishtree_alignment",
    "fishtree_complete_phylogeny",
    "fishtree_phylogeny",
    "fishtree_rogues",
    "fishtree_taxonomy",
    "fishtree_tip_rates"
  ],
  "_help": [
    {
      "page": "fishtree_alignment",
      "title": "Get aligned sequences from the Fish Tree of Life",
      "topics": [
        "fishtree_alignment"
      ]
    },
    {
      "page": "fishtree_complete_phylogeny",
      "title": "Get complete (stochastically-resolved) phylogenies from the Fish Tree of Life",
      "topics": [
        "fishtree_complete_phylogeny"
      ]
    },
    {
      "page": "fishtree_phylogeny",
      "title": "Get a phylogeny from the Fish Tree of Life",
      "topics": [
        "fishtree_phylogeny"
      ]
    },
    {
      "page": "fishtree_rogues",
      "title": "Get rogue taxa that break the monophyly of defined taxa",
      "topics": [
        "fishtree_rogues"
      ]
    },
    {
      "page": "fishtree_taxonomy",
      "title": "Get taxonomies and other data from the Fish Tree of Life",
      "topics": [
        "fishtree_taxonomy"
      ]
    },
    {
      "page": "fishtree_tip_rates",
      "title": "Get tip rates for the Fish Tree of Life",
      "topics": [
        "fishtree_tip_rates"
      ]
    }
  ],
  "_readme": "https://github.com/jonchang/fishtree/raw/HEAD/README.md",
  "_rundeps": [
    "ape",
    "cachem",
    "digest",
    "fastmap",
    "jsonlite",
    "lattice",
    "memoise",
    "nlme",
    "Rcpp",
    "rlang"
  ],
  "_vignettes": [
    {
      "source": "comparative-analysis.Rmd",
      "filename": "comparative-analysis.html",
      "title": "A simple comparative analysis with the Fish Tree of Life",
      "author": "Jonathan Chang",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Getting and cleaning data",
        "Plotting diversification rates",
        "Running an analysis"
      ],
      "created": "2018-08-17 00:24:15",
      "modified": "2024-12-13 22:30:12",
      "commits": 14
    },
    {
      "source": "community-analysis.Rmd",
      "filename": "community-analysis.html",
      "title": "Phylogenetic community assembly with the Fish Tree of Life",
      "author": "Jonathan Chang",
      "engine": "knitr::rmarkdown",
      "headings": [],
      "created": "2019-02-19 23:29:27",
      "modified": "2024-12-13 22:30:12",
      "commits": 7
    }
  ],
  "_score": 7.203685470881908,
  "_indexed": true,
  "_nocasepkg": "fishtree",
  "_universes": [
    "jonchang"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.3.4.9000",
      "date": "2026-05-24T18:08:39.000Z",
      "distro": "noble",
      "commit": "3b661153886ef986c7c3ef4fe62d8e5578621420",
      "fileid": "66e8c8f95554c023ca646dab0875ce6e1caa4874807c76e277e0c2737481a6c9",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jonchang/actions/runs/26368722351"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.3.4.9000",
      "date": "2026-05-24T18:08:20.000Z",
      "distro": "noble",
      "commit": "3b661153886ef986c7c3ef4fe62d8e5578621420",
      "fileid": "175e0aa72fa1ebf29f5b773f8b765d3797b2cd6882eb16bedd559e43b9d8decb",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jonchang/actions/runs/26368722351"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.3.4.9000",
      "date": "2026-05-24T18:07:09.000Z",
      "commit": "3b661153886ef986c7c3ef4fe62d8e5578621420",
      "fileid": "8baf9a49575905eb2808476f4a989829cbd5dd79d7e014cb322ebd686858db35",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jonchang/actions/runs/26368722351"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.3.4.9000",
      "date": "2026-05-24T18:07:27.000Z",
      "commit": "3b661153886ef986c7c3ef4fe62d8e5578621420",
      "fileid": "660e342c82f02a55d2575e8f0db79d5ab63863da73a5ccf007eb5376f3db51d1",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jonchang/actions/runs/26368722351"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.3.4.9000",
      "date": "2026-05-24T18:07:56.000Z",
      "commit": "3b661153886ef986c7c3ef4fe62d8e5578621420",
      "fileid": "a0d527a6a8f4af421ccbc7bc72f6c49aee159667919ec6dcb45f51cc9855cfe8",
      "status": "success",
      "buildurl": "https://github.com/r-universe/jonchang/actions/runs/26368722351"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.3.4.9000",
      "date": "2026-05-24T18:07:02.000Z",
      "commit": "3b661153886ef986c7c3ef4fe62d8e5578621420",
      "fileid": "6a664a9bbc1a8a32a1b7ef954cfacf2a995f6157fab38c1484268ed5577ceed1",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jonchang/actions/runs/26368722351"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.3.4.9000",
      "date": "2026-05-24T18:07:12.000Z",
      "commit": "3b661153886ef986c7c3ef4fe62d8e5578621420",
      "fileid": "049acaf396024f9d4f4939a38dd18da726bcbc8e8378cf93fbd49cf5d387d267",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jonchang/actions/runs/26368722351"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.3.4.9000",
      "date": "2026-05-24T18:07:03.000Z",
      "commit": "3b661153886ef986c7c3ef4fe62d8e5578621420",
      "fileid": "dc0dc7cc39d9ece9c61c0cf0a1635369da2b797a62800b9bb0e1817d31744a87",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jonchang/actions/runs/26368722351"
    }
  ]
}