Package: fishtree 0.3.4.9000

fishtree: Interface to the Fish Tree of Life API

An interface to the Fish Tree of Life API to download taxonomies, phylogenies, fossil calibrations, and diversification rate information for ray-finned fishes.

Authors:Jonathan Chang [aut, cre], Michael E Alfaro [ctb], Daniel L Rabosky [ctb], Stephen A Smith [ctb]

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fishtree.pdf |fishtree.html✨
fishtree/json (API)
NEWS

# Install 'fishtree' in R:
install.packages('fishtree', repos = c('https://jonchang.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/jonchang/fishtree/issues

On CRAN:

Conda:

phylogeny

6.57 score 11 stars 1 packages 56 scripts 370 downloads 2 mentions 6 exports 10 dependencies

Last updated 3 months agofrom:eabb9b6125. Checks:8 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 11 2025
R-4.5-winOKFeb 11 2025
R-4.5-macOKFeb 11 2025
R-4.5-linuxOKFeb 11 2025
R-4.4-winOKFeb 11 2025
R-4.4-macOKFeb 11 2025
R-4.3-winOKFeb 11 2025
R-4.3-macOKFeb 11 2025

Exports:fishtree_alignmentfishtree_complete_phylogenyfishtree_phylogenyfishtree_roguesfishtree_taxonomyfishtree_tip_rates

Dependencies:apecachemdigestfastmapjsonlitelatticememoisenlmeRcpprlang

A simple comparative analysis with the Fish Tree of Life

Jonathan Chang

Rendered fromcomparative-analysis.Rmdusingknitr::rmarkdownon Feb 11 2025.

Last update: 2024-12-13
Started: 2018-08-17

Phylogenetic community assembly with the Fish Tree of Life

Jonathan Chang

Rendered fromcommunity-analysis.Rmdusingknitr::rmarkdownon Feb 11 2025.

Last update: 2024-12-13
Started: 2019-02-19