Package: fishtree 0.3.4.9000

fishtree: Interface to the Fish Tree of Life API

An interface to the Fish Tree of Life API to download taxonomies, phylogenies, fossil calibrations, and diversification rate information for ray-finned fishes.

Authors:Jonathan Chang [aut, cre], Michael E Alfaro [ctb], Daniel L Rabosky [ctb], Stephen A Smith [ctb]

fishtree_0.3.4.9000.tar.gz
fishtree_0.3.4.9000.zip(r-4.7)fishtree_0.3.4.9000.zip(r-4.6)fishtree_0.3.4.9000.zip(r-4.5)
fishtree_0.3.4.9000.tgz(r-4.6-any)fishtree_0.3.4.9000.tgz(r-4.5-any)
fishtree_0.3.4.9000.tar.gz(r-4.7-any)fishtree_0.3.4.9000.tar.gz(r-4.6-any)
fishtree_0.3.4.9000.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
fishtree/json (API)
NEWS

# Install 'fishtree' in R:
install.packages('fishtree', repos = c('https://jonchang.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/jonchang/fishtree/issues

On CRAN:

Conda:

phylogeny

7.20 score 12 stars 1 packages 74 scripts 344 downloads 2 mentions 6 exports 10 dependencies

Last updated from:3b66115388. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK184
source / vignettesOK228
linux-release-x86_64OK164
macos-release-arm64OK113
macos-oldrel-arm64OK87
windows-develOK90
windows-releaseOK89
windows-oldrelOK97
wasm-releaseOK124

Exports:fishtree_alignmentfishtree_complete_phylogenyfishtree_phylogenyfishtree_roguesfishtree_taxonomyfishtree_tip_rates

Dependencies:apecachemdigestfastmapjsonlitelatticememoisenlmeRcpprlang

A simple comparative analysis with the Fish Tree of Life

Jonathan Chang

Rendered fromcomparative-analysis.Rmdusingknitr::rmarkdownon May 24 2026.

Last update: 2024-12-13
Started: 2018-08-17

Phylogenetic community assembly with the Fish Tree of Life

Jonathan Chang

Rendered fromcommunity-analysis.Rmdusingknitr::rmarkdownon May 24 2026.

Last update: 2024-12-13
Started: 2019-02-19