Package: fishtree 0.3.4.9000

fishtree: Interface to the Fish Tree of Life API

An interface to the Fish Tree of Life API to download taxonomies, phylogenies, fossil calibrations, and diversification rate information for ray-finned fishes.

Authors:Jonathan Chang [aut, cre], Michael E Alfaro [ctb], Daniel L Rabosky [ctb], Stephen A Smith [ctb]

fishtree_0.3.4.9000.tar.gz
fishtree_0.3.4.9000.zip(r-4.7-any)fishtree_0.3.4.9000.zip(r-4.6-any)fishtree_0.3.4.9000.zip(r-4.5-any)
fishtree_0.3.4.9000.tgz(r-4.6-any)fishtree_0.3.4.9000.tgz(r-4.5-any)
fishtree_0.3.4.9000.tar.gz(r-4.7-any)fishtree_0.3.4.9000.tar.gz(r-4.6-any)
fishtree_0.3.4.9000.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
fishtree/json (API)

# Install 'fishtree' in R:
install.packages('fishtree', repos = c('https://jonchang.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/jonchang/fishtree/issues

On CRAN:

Conda:

phylogeny

7.27 score 13 stars 1 packages 80 scripts 470 downloads 2 mentions 6 exports 10 dependencies

Last updated from:f06abfcc2c. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develOK142
source / vignettesOK216
linux-releaseOK138
macos-releaseOK147
macos-oldrelOK195
windows-develOK59
windows-releaseOK78
windows-oldrelOK85
wasm-releaseOK112

Exports:fishtree_alignmentfishtree_complete_phylogenyfishtree_phylogenyfishtree_roguesfishtree_taxonomyfishtree_tip_rates

Dependencies:apecachemdigestfastmapjsonlitelatticememoisenlmeRcpprlang

A simple comparative analysis with the Fish Tree of Life
Getting and cleaning data | Plotting diversification rates | Running an analysis
Rendered fromcomparative-analysis.Rmdusingknitr::rmarkdown

Last update: 2024-12-13
Started: 2018-08-17

Phylogenetic community assembly with the Fish Tree of Life
Rendered fromcommunity-analysis.Rmdusingknitr::rmarkdown

Last update: 2024-12-13
Started: 2019-02-19