Package: fishtree 0.3.4.9000

fishtree: Interface to the Fish Tree of Life API

An interface to the Fish Tree of Life API to download taxonomies, phylogenies, fossil calibrations, and diversification rate information for ray-finned fishes.

Authors:Jonathan Chang [aut, cre], Michael E Alfaro [ctb], Daniel L Rabosky [ctb], Stephen A Smith [ctb]

fishtree_0.3.4.9000.tar.gz
fishtree_0.3.4.9000.zip(r-4.7)fishtree_0.3.4.9000.zip(r-4.6)fishtree_0.3.4.9000.zip(r-4.5)
fishtree_0.3.4.9000.tgz(r-4.6-any)fishtree_0.3.4.9000.tgz(r-4.5-any)
fishtree_0.3.4.9000.tar.gz(r-4.7-any)fishtree_0.3.4.9000.tar.gz(r-4.6-any)
fishtree_0.3.4.9000.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
fishtree/json (API)

# Install 'fishtree' in R:
install.packages('fishtree', repos = c('https://jonchang.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/jonchang/fishtree/issues

On CRAN:

Conda:

phylogeny

7.38 score 12 stars 1 packages 83 scripts 437 downloads 2 mentions 6 exports 10 dependencies

Last updated from:f06abfcc2c. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK185
source / vignettesOK195
linux-release-x86_64OK147
macos-release-arm64OK164
macos-oldrel-arm64OK146
windows-develOK95
windows-releaseOK98
windows-oldrelOK79
wasm-releaseOK139

Exports:fishtree_alignmentfishtree_complete_phylogenyfishtree_phylogenyfishtree_roguesfishtree_taxonomyfishtree_tip_rates

Dependencies:apecachemdigestfastmapjsonlitelatticememoisenlmeRcpprlang

A simple comparative analysis with the Fish Tree of Life
Getting and cleaning data | Plotting diversification rates | Running an analysis
Rendered fromcomparative-analysis.Rmdusingknitr::rmarkdown

Last update: 2024-12-13
Started: 2018-08-17

Phylogenetic community assembly with the Fish Tree of Life
Rendered fromcommunity-analysis.Rmdusingknitr::rmarkdown

Last update: 2024-12-13
Started: 2019-02-19